STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427665_03224Unannotated protein. (666 aa)    
Predicted Functional Partners:
GCA_000427665_03547
Unannotated protein.
   
 
  0.778
GCA_000427665_02488
Unannotated protein.
  
  
 0.690
GCA_000427665_03748
Unannotated protein.
 
  
 0.649
GCA_000427665_04326
Unannotated protein.
   
 
 0.644
GCA_000427665_04550
Unannotated protein.
    
  0.639
GCA_000427665_03895
Unannotated protein.
   
    0.622
GCA_000427665_02461
Unannotated protein.
   
 
  0.606
GCA_000427665_00639
Unannotated protein.
    
  0.581
GCA_000427665_02761
Unannotated protein.
     
 0.565
GCA_000427665_00657
Unannotated protein.
    
  0.558
Your Current Organism:
Geminicoccus roseus
NCBI taxonomy Id: 1089551
Other names: G. roseus DSM 18922, Geminicoccus roseus DSM 18922, Geminicoccus roseus str. DSM 18922, Geminicoccus roseus strain DSM 18922
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.