STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cooC1CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC. (262 aa)    
Predicted Functional Partners:
acsC
Corrinoid/iron-sulfur protein large subunit AcsC.
 
  
 0.961
acsD
Corrinoid/iron-sulfur protein small subunit AcsD.
 
  
 0.948
acsA
Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit alpha.
 
  
 0.943
gcvH2
Glycine cleavage system H protein GcvH; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
      
 0.790
yaeB
Methyltransferase YaeB.
      0.786
fcha
Methenyltetrahydrofolate cyclohydrolase Fcha.
      
 0.785
AFV10356.1
ABC transporter, ATP binding protein.
 
     0.780
sigH
RNA polymerase sigma-H factor SigH; Belongs to the sigma-70 factor family.
      
 0.777
rpoN
RNA polymerase sigma-54 factor RpoN.
      
 0.777
AFV10354.1
ABC transporter, periplasmic binding protein.
 
     0.774
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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