STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV10793.1Phosphoribosyltransferase. (277 aa)    
Predicted Functional Partners:
comFA
ComF operon protein 1.
  
  
 0.905
dprA
DNA protecting protein DprA.
 
 
 0.872
comEC
ComE operon protein 3.
 
  
 0.859
comFB
Late competence development protein ComFB.
  
  
 0.818
AFV11263.1
Mg chelatase subunit ChlI.
 
  
 0.792
radC
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.783
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.740
tyrA
Prephenate dehydrogenase TyrA.
   
  
 0.729
AFV11309.1
Magnesium transporter MgtE family.
   
    0.714
cph
Phytochrome-like protein Cph.
  
  
 0.679
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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