STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV10893.1PDZ/DHR/GLGF domain-containing protein. (416 aa)    
Predicted Functional Partners:
ctpA
Processing protease CtpA; Belongs to the peptidase S41A family.
     
 0.871
AFV10483.1
O-antigen ligase-like protein.
  
 
 0.793
AFV11514.1
Putative membrane protein.
  
     0.706
AFV12973.1
Hypothetical protein.
 
 
 
 0.659
yvyF
Flagellar protein YvyF.
  
 
  0.632
AFV11767.1
Hypothetical protein.
  
     0.611
yunB
Sporulation protein YunB.
  
     0.566
lonA
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
   
 0.561
AFV10486.1
Hypothetical protein.
  
     0.540
AFV11281.1
Cell division control protein 48; Belongs to the AAA ATPase family.
    
 0.538
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.