STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV11124.1Metal dependent phosphohydrolase. (739 aa)    
Predicted Functional Partners:
cph
Phytochrome-like protein Cph.
 
 0.951
ydaM
Diguanylate cyclase YdaM.
 
 0.882
AFV12281.1
Diguanylate cyclase domain-containing protein.
 
 
0.878
AFV11123.1
Diguanylate cyclase.
 
 
 0.798
AFV10750.1
Response regulator receiver protein.
  
  
 0.652
leuS
leucyl-tRNA ligase LeuS; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.569
amyB2
Amylopullulanase AmyB.
  
   
 0.482
AFV10942.1
Putative PAS/PAC sensor protein.
  
 
 0.469
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.463
AFV12282.1
FIST domain-containing signal transduction protein.
 
     0.459
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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