STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csd1Cysteine desulfurase Csd. (382 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC.
  
 0.926
sufB
FeS assembly protein SufB.
 
 0.912
nifU
NIF system FeS cluster assembly protein NifU.
  
 
 0.884
AFV12536.1
NifU-like Fe-S cluster assembly protein.
  
 
 0.884
AFV11039.1
Endonuclease/exonuclease/phosphatase.
    
   0.750
AFV10317.1
SirA-like response regulator protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.709
AFV11177.1
Hypothetical protein.
 
   
 0.553
AFV12119.1
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.530
AFV11971.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
   
 
 0.504
AFV12122.1
Hypothetical protein.
 
     0.488
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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