STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpFPenicillin-binding protein 1F. (814 aa)    
Predicted Functional Partners:
dacF3
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
   
 
 0.916
dacF1
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
   
 
 0.908
dacF2
D-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family.
   
 
 0.908
mrdA
Penicillin-binding protein 2, peptidoglycan glycosyltransferase MrdA.
 
 
 
 0.777
spoVD
Stage V sporulation protein D.
 
 
0.738
AFV11403.1
Transcriptional regulator GntR family.
       0.705
AFV12945.1
M23-like peptidase.
  
   
 0.631
spoVE1
Stage V sporulation protein E; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
 
 
 0.610
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.607
AFV11889.1
Peptidoglycan glycosyltransferase.
 
 
 
0.594
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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