STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiBABC transporter ATP-binding protein YfiB. (580 aa)    
Predicted Functional Partners:
AFV12107.1
ABC transporter-like protein.
 
    
0.834
AFV12109.1
Putative MarR-like transcriptional regulator.
 
  
 0.796
AFV12557.1
Putative ATPase, AAA+ type.
    
0.765
tauB
Taurine ABC transport system ATP-binding protein TauB.
 
    
0.749
AFV11971.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
 
 0.693
AFV11281.1
Cell division control protein 48; Belongs to the AAA ATPase family.
   
 0.652
spoVK
Stage V sporulation protein K.
   
 0.652
acpP
Acyl carrier protein AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.621
nodI2
Nod factor export ATP-binding protein I.
  
0.615
nodi3
Nod factor export ATP-binding protein I.
  
0.592
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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