STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV12147.1Radical SAM domain-containing protein. (347 aa)    
Predicted Functional Partners:
AFV12146.1
Aldolase-like protein.
   
 0.973
AFV10371.1
Radical SAM domain-containing protein.
     
  0.900
birA
biotin--acetyl-CoA-carboxylase ligase BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
  0.900
AFV12148.1
Biotin/lipoate A/B protein ligase-like protein.
 
     0.858
AFV12150.1
Biotin/lipoate A/B protein ligase-like protein.
 
     0.823
AFV12145.1
Beta-lactamase-like protein.
       0.773
AFV12144.1
Isochorismatase-like protein.
       0.623
lplA2
Lipoate-protein ligase A.
       0.602
AFV11716.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
     0.582
AFV11753.1
CoB--CoM heterodisulfide reductase-like protein.
 
     0.520
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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