STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCA2Glycine betaine/carnitine/choline transport ATP-binding protein. (373 aa)    
Predicted Functional Partners:
opuBB
Choline transport system permease protein.
 0.995
opuCB2
Glycine betaine/carnitine/choline transport system permease protein.
 0.992
AFV12232.1
ABC-type glycine betaine transport system, substrate-binding domain protein.
 0.990
opuCC
Glycine betaine/carnitine/choline-binding protein.
 0.982
opuCB1
Glycine betaine/carnitine/choline transport system permease protein.
 0.982
AFV12210.1
Hypothetical protein.
 0.981
opuCA1
Glycine betaine/carnitine/choline transport ATP-binding protein.
  
  
 
0.908
AFV13077.1
Putative ABC transporter, ATP-binding protein.
 
    
0.907
ybhS
Inner membrane transport permease YbhS.
 
      0.900
modB
Molybdate/tungstate ABC transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.852
Your Current Organism:
Thermacetogenium phaeum
NCBI taxonomy Id: 1089553
Other names: Clostridiaceae str. PB, T. phaeum DSM 12270, Thermacetogenium phaeum DSM 12270, Thermacetogenium phaeum PB, Thermacetogenium phaeum str. DSM 12270, Thermacetogenium phaeum strain DSM 12270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.