Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ183_01590 | CJ183_06495 | GCA_000934145_02390 | GCA_000934145_00728 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein. | 0.436 |
CJ183_01590 | CJ183_18490 | GCA_000934145_02390 | GCA_000934145_02611 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein. | 0.546 |
CJ183_01590 | rhlB | GCA_000934145_02390 | GCA_000934145_02811 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.436 |
CJ183_01590 | rplC | GCA_000934145_02390 | GCA_000934145_00753 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein. | 0.995 |
CJ183_01590 | rplM | GCA_000934145_02390 | GCA_000934145_01692 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
CJ183_01590 | rplU | GCA_000934145_02390 | GCA_000934145_01131 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.984 |
CJ183_01590 | rpsC | GCA_000934145_02390 | GCA_000934145_00759 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
CJ183_01590 | rpsG | GCA_000934145_02390 | GCA_000934145_00092 | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
CJ183_06495 | CJ183_01590 | GCA_000934145_00728 | GCA_000934145_02390 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | 0.436 |
CJ183_06495 | CJ183_18490 | GCA_000934145_00728 | GCA_000934145_02611 | Unannotated protein. | Unannotated protein. | 0.599 |
CJ183_06495 | rplC | GCA_000934145_00728 | GCA_000934145_00753 | Unannotated protein. | Unannotated protein. | 0.726 |
CJ183_06495 | rplM | GCA_000934145_00728 | GCA_000934145_01692 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.680 |
CJ183_06495 | rplU | GCA_000934145_00728 | GCA_000934145_01131 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.479 |
CJ183_06495 | rpsC | GCA_000934145_00728 | GCA_000934145_00759 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.491 |
CJ183_06495 | rpsG | GCA_000934145_00728 | GCA_000934145_00092 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.402 |
CJ183_14530 | CJ183_14535 | GCA_000934145_02131 | GCA_000934145_02132 | Unannotated protein. | Unannotated protein. | 0.853 |
CJ183_14530 | CJ183_18490 | GCA_000934145_02131 | GCA_000934145_02611 | Unannotated protein. | Unannotated protein. | 0.698 |
CJ183_14535 | CJ183_14530 | GCA_000934145_02132 | GCA_000934145_02131 | Unannotated protein. | Unannotated protein. | 0.853 |
CJ183_14535 | CJ183_18490 | GCA_000934145_02132 | GCA_000934145_02611 | Unannotated protein. | Unannotated protein. | 0.695 |
CJ183_18490 | CJ183_01590 | GCA_000934145_02611 | GCA_000934145_02390 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uS15 family. | 0.546 |
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