STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO18578.1Tight adherence protein C. (290 aa)    
Predicted Functional Partners:
SDO18546.1
Tight adherence protein B.
 
     0.958
SDO26922.1
Flp pilus assembly protein, ATPase CpaE.
 
  
 0.892
SDO18069.1
Pilus assembly protein CpaF.
 
    0.833
SDO26947.1
Chaperone for flagella basal body P-ring formation.
 
    0.799
SDO19285.1
Hypothetical protein.
 
     0.789
SDO26999.1
Hypothetical protein.
  
     0.773
SDO26975.1
DNA binding domain-containing protein, excisionase family.
  
     0.772
SDO27027.1
LysM domain-containing protein.
  
     0.771
SDP33727.1
DNA binding domain-containing protein, excisionase family.
  
     0.763
SDO20785.1
Tight adherence protein C.
 
  
 0.730
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.