STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO25220.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (242 aa)    
Predicted Functional Partners:
SDP31161.1
Glutamate synthase (NADH) large subunit.
     
 0.829
SDO25245.1
Transcriptional regulator, LacI family.
   
   0.795
SDO18303.1
Phosphocarrier protein HPr; Belongs to the PEP-utilizing enzyme family.
     
 0.785
SDO47293.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.707
SDP36909.1
Short-chain dehydrogenase.
  
 
  0.695
SDO63038.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.670
SDO41266.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
 0.662
SDP44211.1
[acyl-carrier-protein] S-malonyltransferase; Manually curated.
  
  0.608
SDP44295.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 0.608
SDO85627.1
Propane monooxygenase reductase subunit.
   
  0.586
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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