STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO26797.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (454 aa)    
Predicted Functional Partners:
SDP16241.1
LytR cell envelope-related transcriptional attenuator.
  
     0.651
SDO25623.1
Methionine synthase II (cobalamin-independent).
  
     0.636
SDP05174.1
Hypothetical protein.
  
     0.619
SDP01729.1
Hypothetical protein.
  
     0.604
SDO44799.1
Protein of unknown function.
  
     0.600
SDO39657.1
Hypothetical protein.
  
     0.584
SDO44872.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.553
SDP40842.1
Alpha-1,6-mannosyltransferase.
  
     0.540
SDO35221.1
Hypothetical protein.
  
     0.529
SDO29454.1
Hypothetical protein.
  
     0.522
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.