STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO49935.1L-rhamnose isomerase / sugar isomerase. (388 aa)    
Predicted Functional Partners:
SDO49706.1
L-rhamnulokinase.
 
  
 0.967
SDO49650.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
  0.919
SDO55451.1
L-rhamnose mutarotase.
 
  
 0.904
SDO49967.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.895
SDO91107.1
Xylose isomerase.
  
  
 
0.857
SDO49892.1
Rhamnose transport system substrate-binding protein.
 
     0.834
SDO67630.1
L-rhamnose mutarotase.
 
   
 0.809
SDO36048.1
L-fuculokinase.
    
  0.580
SDO41385.1
L-xylulokinase.
    
  0.580
SDO52037.1
Sugar (pentulose or hexulose) kinase.
    
  0.580
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.