STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO50873.1Major Facilitator Superfamily protein. (387 aa)    
Predicted Functional Partners:
SDO50815.1
D-serine deaminase, pyridoxal phosphate-dependent.
  
    0.559
SDO50786.1
FAD-linked oxidoreductase.
  
    0.513
SDO50844.1
DNA-binding transcriptional regulator YbjK.
       0.513
SDO55451.1
L-rhamnose mutarotase.
  
  
 0.508
SDO67630.1
L-rhamnose mutarotase.
  
  
 0.508
SDO67547.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.487
SDO50752.1
Hypothetical protein.
  
    0.466
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
    
  0.420
SDO40714.1
CDP-diacylglycerol---serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.420
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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