STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO51239.1Allantoin racemase. (244 aa)    
Predicted Functional Partners:
SDO51328.1
Allantoinase.
  
 0.942
SDO51186.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.
 
  
  0.917
SDO51266.1
Nucleobase:cation symporter-1, NCS1 family.
 
     0.884
SDO39052.1
Dihydropyrimidinase.
   
  0.818
SDO51153.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
  0.767
SDO51126.1
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
  0.648
SDO51212.1
DNA-binding transcriptional regulator, GntR family.
 
     0.570
alc
Allantoicase; Belongs to the allantoicase family.
    
  0.499
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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