STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO62293.1Deazaflavin-dependent oxidoreductase, nitroreductase family. (163 aa)    
Predicted Functional Partners:
SDO44163.1
Probable F420-dependent oxidoreductase, Rv1855c family.
  
     0.754
SDO53444.1
Probable F420-dependent oxidoreductase, MSMEG_2906 family.
  
     0.753
SDO69842.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.748
SDP35679.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.746
SDP04966.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
   
 0.743
SDP04993.1
LPPG:FO 2-phospho-L-lactate transferase.
 
     0.739
SDO69753.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
  
     0.733
SDP18730.1
F420-dependent oxidoreductase, G6PDH family.
  
     0.701
SDP43010.1
Adenylyltransferase and sulfurtransferase.
  
  0.695
SDP37545.1
Luciferase-like monooxygenase.
  
     0.692
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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