STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO68212.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (239 aa)    
Predicted Functional Partners:
SDP31161.1
Glutamate synthase (NADH) large subunit.
    
  0.823
SDO65255.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.645
SDO68183.1
DNA-binding transcriptional regulator, AcrR family; Manually curated.
 
     0.629
SDP25738.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.614
SDP50446.1
Ribitol 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.611
SDP16995.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.586
SDP40201.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.567
SDO90537.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.518
SDO36540.1
DNA-binding transcriptional regulator, MarR family.
  
     0.503
SDP49814.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.503
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.