STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO69086.1Uncharacterized conserved protein YndB, AHSA1/START domain. (168 aa)    
Predicted Functional Partners:
SDO69054.1
Dihydrofolate reductase.
 
     0.949
SDO69120.1
DNA-binding transcriptional regulator, ArsR family.
    0.945
SDO37943.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
      0.854
SDO24610.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
    
0.838
SDO24635.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.616
SDO71383.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.589
SDO25267.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.559
SDO37914.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.501
SDO70392.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.438
SDP36178.1
Dihydrofolate reductase.
 
     0.433
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.