STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO88134.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
SDO88112.1
Uncharacterized protein.
  
 0.996
larC
Hypothetical protein; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
 
  
 0.980
SDO88067.1
Protein of unknown function.
 
  
 0.978
SDO88092.1
Gluconate kinase, SKI family.
       0.776
SDO87995.1
Inosose dehydratase.
       0.773
SDO88018.1
Predicted dehydrogenase.
       0.773
SDO88039.1
Transcriptional regulator, LacI family.
       0.773
SDO87904.1
Glucuronate isomerase.
       0.724
SDO87828.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.697
SDO87855.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.697
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.