STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO91618.1oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. (685 aa)    
Predicted Functional Partners:
SDO91796.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.991
SDO91692.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
  
 0.973
SDO91757.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
  
 0.968
SDO91656.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
  
 0.965
SDO91722.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
  
 0.963
SDP17175.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.955
SDO84088.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
 
 0.911
SDO70177.1
MOSC domain-containing protein YiiM.
  
 
 0.908
SDP15392.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 0.901
SDO81878.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.898
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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