STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP11114.1Osmotically inducible protein OsmC. (145 aa)    
Predicted Functional Partners:
SDO41836.1
Trehalose 6-phosphate synthase/phosphatase.
   
    0.829
SDO76715.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.646
SDP36928.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.478
SDP28187.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.467
SDP40148.1
CsbD-like; Manually curated; Belongs to the UPF0337 (CsbD) family.
  
    0.467
SDP33956.1
Putative intracellular protease/amidase.
  
    0.436
SDO68149.1
MarR family protein.
 
    0.400
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.