STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP16576.1Beta-mannosidase. (816 aa)    
Predicted Functional Partners:
SDP40932.1
Hexosaminidase.
 
 0.760
SDP46487.1
alpha-N-arabinofuranosidase.
 
  
 0.671
SDO70912.1
Ig-like domain (group 3).
 
 0.655
SDO51453.1
Beta-galactosidase.
 
 
 0.647
SDO87085.1
Ig-like domain (group 3).
 
 0.643
SDP16612.1
Glycerophosphoryl diester phosphodiesterase; Manually curated.
  
    0.634
SDO41452.1
1-phosphofructokinase.
   
    0.583
SDO51950.1
1-phosphofructokinase.
   
    0.583
SDO57405.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.534
SDP20185.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.534
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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