STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP23324.1Iron complex transport system ATP-binding protein. (267 aa)    
Predicted Functional Partners:
SDP23249.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.999
SDP23348.1
Iron complex transport system substrate-binding protein.
 
 0.999
SDP23281.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.990
cobQ
Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
 
  0.919
SDO41773.1
High-affinity iron transporter.
   
  
 0.771
SDO24501.1
cob(I)alamin adenosyltransferase.
   
  0.657
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
   
 0.657
SDO41962.1
Zinc/manganese transport system permease protein.
    
 0.588
SDO42019.1
Zinc/manganese transport system substrate-binding protein.
  
 
 0.585
SDP24546.1
Hypothetical protein.
      
 0.584
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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