STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP25716.1Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein. (209 aa)    
Predicted Functional Partners:
SDP25738.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.486
SDP25772.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
       0.486
SDO47672.1
Metallophosphoesterase, PPA1498 family.
 
   
  0.453
SDP17995.1
Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family.
      0.417
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.