STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP32377.1CHAT domain-containing protein. (860 aa)    
Predicted Functional Partners:
SDP32308.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.903
SDP32331.1
Hypothetical protein.
 
     0.890
SDP32283.1
Subtilase family protein.
 
     0.886
SDP32229.1
Subtilase family protein.
 
     0.855
SDO36947.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.728
nhaA
Sodium/proton antiporter, NhaA family; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.583
SDO41836.1
Trehalose 6-phosphate synthase/phosphatase.
   
    0.581
SDP03402.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.547
SDP32355.1
CHAT domain-containing protein.
 
    
0.527
SDP33005.1
Deoxyribonuclease-4.
  
     0.496
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.