STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP35435.1Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. (233 aa)    
Predicted Functional Partners:
SDP32007.1
tRNA (adenine57-N1/adenine58-N1)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
      0.911
SDO41836.1
Trehalose 6-phosphate synthase/phosphatase.
    
 0.852
hisE
phosphoribosyl-ATP pyrophosphatase.
      0.842
SDP38402.1
Hypothetical protein.
  
    0.808
SDP05523.1
Riboflavin synthase alpha chain.
   
 
  0.805
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.776
SDO90819.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
  0.761
SDO46423.1
Sugar-phosphatase; Manually curated.
  
  
 
0.696
SDP35452.1
PAC2 family protein; Manually curated.
       0.643
SDP22454.1
Protein-tyrosine phosphatase; Manually curated; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
 
  0.601
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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