STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP37346.14-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family. (301 aa)    
Predicted Functional Partners:
SDP37496.1
Thioredoxin reductase.
  
  0.990
SDP37473.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
 
  0.970
SDP37455.1
Glycine/D-amino acid oxidase.
 
  
  0.965
SDP37522.1
Proline racemase; Belongs to the proline racemase family.
 
     0.950
SDP37373.1
NADP-dependent aldehyde dehydrogenase.
 
 
  0.896
SDP37432.1
Ornithine cyclodeaminase.
 
   
 0.883
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.875
SDP37406.1
DNA-binding transcriptional regulator, GntR family.
 
     0.862
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.826
SDP15392.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.798
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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