STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP42527.1Hypothetical protein. (177 aa)    
Predicted Functional Partners:
SDO36719.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
   
    0.801
SDO96782.1
Osmoprotectant transport system substrate-binding protein.
  
    0.789
SDP00913.1
Osmoprotectant transport system substrate-binding protein.
  
    0.789
SDP42552.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.666
SDO34021.1
Anti-sigma-factor antagonist.
   
    0.535
SDO64170.1
Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives).
  
     0.516
SDO89364.1
Helicase/secretion neighborhood CpaE-like protein.
  
     0.472
SDO95975.1
Hypothetical protein.
  
     0.471
SDP42760.1
Protein of unknown function.
  
     0.459
SDP05174.1
Hypothetical protein.
  
     0.424
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.