STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP49345.1acyl-CoA thioester hydrolase. (158 aa)    
Predicted Functional Partners:
SDP44211.1
[acyl-carrier-protein] S-malonyltransferase; Manually curated.
 
 0.889
SDP49367.1
Glutamate dehydrogenase.
 
    0.881
SDP17175.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.828
SDP49320.1
Hypothetical protein.
  
    0.827
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.806
SDO61651.1
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family.
   
  0.645
SDP45184.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
    
   0.634
SDP45827.1
RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family.
    
   0.634
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
   
   0.624
SDP31449.1
Uncharacterized domain 1-containing protein.
 
  
 0.624
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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