STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP49479.140-residue YVTN family beta-propeller repeat-containing protein. (926 aa)    
Predicted Functional Partners:
SDP49504.1
ABC-2 type transport system permease protein.
 
    0.950
SDP49529.1
ABC-2 type transport system ATP-binding protein.
 
    0.947
SDP23430.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
  
 0.898
SDP31161.1
Glutamate synthase (NADH) large subunit.
    
  0.841
SDO62245.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.791
SDO72571.1
2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-or 3'-nucleotidase, 5'-nucleotidase family; Belongs to the 5'-nucleotidase family.
     
 0.774
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.734
SDP47307.1
6-phosphogluconolactonase, cycloisomerase 2 family.
  
     0.716
SDP26198.1
WD40-like Beta Propeller Repeat.
   
   0.678
SDP22631.1
Phospholipase C.
  
     0.645
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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