STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP50466.1Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (192 aa)    
Predicted Functional Partners:
SDP30625.1
DNA polymerase-3 subunit epsilon.
   
 0.694
rnj
Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
      
 0.665
SDO80813.1
ATP-dependent helicase HrpA.
  
    0.639
SDO72602.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.633
SDP41871.1
Phosphoesterase RecJ domain-containing protein.
     
 0.627
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.563
SDO22931.1
Ribonuclease E.
  
  
 0.519
SDP47267.1
Cysteine-rich secretory protein family protein.
 
    0.519
SDP50431.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.497
SDP50446.1
Ribitol 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.497
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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