STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP50977.1Selenocysteine lyase/Cysteine desulfurase. (580 aa)    
Predicted Functional Partners:
SDP40705.1
FeS assembly scaffold apoprotein IscU.
  
 0.937
SDP50997.1
Hypothetical protein.
       0.732
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.729
SDP40778.1
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.655
SDP40802.1
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.650
SDP40755.1
Fe-S cluster assembly ATP-binding protein.
  
  
 0.633
SDO79768.1
Thioredoxin reductase (NADPH).
  
 
 0.610
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
    
  0.517
SDO72331.1
Thioredoxin reductase (NADPH).
   
 
  0.516
SDP51018.1
DNA-binding transcriptional regulator, FrmR family.
   
   0.471
Your Current Organism:
Nakamurella panacisegetis
NCBI taxonomy Id: 1090615
Other names: CECT 7604, DSM 26919, KCTC 19426, N. panacisegetis, Nakamurella panacisegetis Kim et al. 2012, Nakamurella sp. P4-7, strain P4-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.