Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEO16531.1Hypothetical protein; Belongs to the UPF0102 family. (82 aa)    
Predicted Functional Partners:
CEO17882.1
Hypothetical protein.
 
     0.553
CEO16952.1
DNA polymerase III subunit chi.
  
     0.522
pheT
Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.490
CEO16532.1
Helix-turn-helix protein.
       0.475
mreB
Rod shape-determining protein MreB.
       0.447
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.445
CEO17226.1
Outer membrane protein (OmpH-like).
  
     0.425
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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