Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEO16556.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
CEO16945.1
Hypothetical protein.
 
     0.754
CEO17025.1
Hypothetical protein.
  
     0.745
CEO17423.1
Tim44-like domain protein.
  
     0.715
lptD
LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.697
CEO16524.1
SmpA / OmlA family protein.
 
     0.685
CEO17626.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.678
surA
Chaperone SurA.
  
     0.668
CEO17401.1
Hypothetical protein.
  
     0.650
ompB
Outer membrane protein B precursor.
  
     0.648
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.647
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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