Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uspFUniversal stress protein F. (148 aa)    
Predicted Functional Partners:
CEO16591.1
Hypothetical protein.
 
     0.933
tme
NADP-dependent malic enzyme.
  
  
 0.812
camB
Putidaredoxin.
  
  
 0.787
CEO16592.1
Hypothetical protein.
       0.780
ogt
Methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.673
hscB
Co-chaperone protein HscB homolog; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.
     
 0.667
hscA
Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
     
 0.665
CEO17824.1
PAP2 superfamily protein.
  
  
 0.599
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
     
 0.588
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
     
 0.588
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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