STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiDPeptidyl-prolyl cis-trans isomerase D. (524 aa)    
Predicted Functional Partners:
CEO17154.1
Hypothetical protein.
 
 
 
 0.742
CEO16723.1
Type IV secretion system protein VirB6.
  
     0.650
bamB
Outer membrane protein assembly factor BamB precursor.
  
 
 0.635
CEO16607.1
Hypothetical protein; Split gene in original assembly 785 790.
 
     0.623
CEO17626.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.620
CEO16722.1
Type IV secretion system protein VirB6.
  
     0.619
ompA
Outer membrane protein A precursor.
       0.584
surA
Chaperone SurA.
 
   
 0.572
CEO16650.1
Putative adhesin RP828 precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
   
 0.562
CEO16928.1
Hypothetical protein.
  
  
 0.557
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.