Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phbC_1Poly-beta-hydroxybutyrate polymerase, N-terminal domain only. (249 aa)    
Predicted Functional Partners:
phbC_2
Poly-beta-hydroxybutyrate polymerase, C-terminal domain only.
     0.992
rutD_1
Putative aminoacrylate hydrolase RutD.
  
  
  0.948
pta
Phosphate acetyltransferase.
 
  
 0.920
CEO16672.1
Hypothetical protein.
       0.773
fadB
Fatty acid oxidation complex subunit alpha.
      
 0.458
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
       0.424
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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