mlaE protein (Rickettsia monacensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mlaE

Putative phospholipid ABC transporter permease protein MlaE. (259 aa)

Predicted Functional Partners:

cysA

0.999

mlaD

0.997

mlaC

0.927

CEO16711.1

0.780

mlaA

0.665

rpmB

0.580

alr

0.573

rpmE

0.556

CEO16953.1

0.525

tme

0.523

Your Current Organism:

Rickettsia monacensis

NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEO16711.1	cysA	RMONA_01485	RMONA_01480	Hypothetical protein.	Sulfate/thiosulfate import ATP-binding protein CysA.	0.780
CEO16711.1	mlaE	RMONA_01485	RMONA_01475	Hypothetical protein.	Putative phospholipid ABC transporter permease protein MlaE.	0.780
CEO16711.1	rpmB	RMONA_01485	RMONA_01490	Hypothetical protein.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.556
CEO16711.1	rpmE	RMONA_01485	RMONA_01495	Hypothetical protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.556
CEO16953.1	mlaE	RMONA_02770	RMONA_01475	Putative permease YjgP/YjgQ family protein.	Putative phospholipid ABC transporter permease protein MlaE.	0.525
alr	cysA	RMONA_01470	RMONA_01480	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Sulfate/thiosulfate import ATP-binding protein CysA.	0.573
alr	mlaE	RMONA_01470	RMONA_01475	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	Putative phospholipid ABC transporter permease protein MlaE.	0.573
cysA	CEO16711.1	RMONA_01480	RMONA_01485	Sulfate/thiosulfate import ATP-binding protein CysA.	Hypothetical protein.	0.780
cysA	alr	RMONA_01480	RMONA_01470	Sulfate/thiosulfate import ATP-binding protein CysA.	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	0.573
cysA	mlaA	RMONA_01480	RMONA_02300	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid-binding lipoprotein MlaA precursor.	0.513
cysA	mlaC	RMONA_01480	RMONA_02305	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid-binding protein MlaC precursor.	0.911
cysA	mlaD	RMONA_01480	RMONA_03235	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid ABC transporter-binding protein MlaD.	0.996
cysA	mlaE	RMONA_01480	RMONA_01475	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid ABC transporter permease protein MlaE.	0.999
cysA	rpmB	RMONA_01480	RMONA_01490	Sulfate/thiosulfate import ATP-binding protein CysA.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.556
cysA	rpmE	RMONA_01480	RMONA_01495	Sulfate/thiosulfate import ATP-binding protein CysA.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.556
cysA	tme	RMONA_01480	RMONA_05480	Sulfate/thiosulfate import ATP-binding protein CysA.	NADP-dependent malic enzyme.	0.497
mlaA	cysA	RMONA_02300	RMONA_01480	Putative phospholipid-binding lipoprotein MlaA precursor.	Sulfate/thiosulfate import ATP-binding protein CysA.	0.513
mlaA	mlaC	RMONA_02300	RMONA_02305	Putative phospholipid-binding lipoprotein MlaA precursor.	Putative phospholipid-binding protein MlaC precursor.	0.978
mlaA	mlaD	RMONA_02300	RMONA_03235	Putative phospholipid-binding lipoprotein MlaA precursor.	Putative phospholipid ABC transporter-binding protein MlaD.	0.864
mlaA	mlaE	RMONA_02300	RMONA_01475	Putative phospholipid-binding lipoprotein MlaA precursor.	Putative phospholipid ABC transporter permease protein MlaE.	0.665