mlaC protein (Rickettsia monacensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mlaC

Putative phospholipid-binding protein MlaC precursor. (199 aa)

Predicted Functional Partners:

mlaD

0.986

mlaA

0.960

mlaE

0.923

cysA

0.921

CEO16866.1

0.714

CEO16928.1

0.510

lptD

0.450

CEO16869.1

0.425

CEO17643.1

0.418

CEO16608.1

0.416

Your Current Organism:

Rickettsia monacensis

NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEO16608.1	mlaC	RMONA_00930	RMONA_02305	Muropeptide transporter.	Putative phospholipid-binding protein MlaC precursor.	0.416
CEO16866.1	mlaA	RMONA_02295	RMONA_02300	Tetratricopeptide repeat protein.	Putative phospholipid-binding lipoprotein MlaA precursor.	0.787
CEO16866.1	mlaC	RMONA_02295	RMONA_02305	Tetratricopeptide repeat protein.	Putative phospholipid-binding protein MlaC precursor.	0.714
CEO16869.1	mlaC	RMONA_02310	RMONA_02305	Hypothetical protein.	Putative phospholipid-binding protein MlaC precursor.	0.425
CEO16928.1	lptD	RMONA_02620	RMONA_08455	Hypothetical protein.	LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.674
CEO16928.1	mlaA	RMONA_02620	RMONA_02300	Hypothetical protein.	Putative phospholipid-binding lipoprotein MlaA precursor.	0.825
CEO16928.1	mlaC	RMONA_02620	RMONA_02305	Hypothetical protein.	Putative phospholipid-binding protein MlaC precursor.	0.510
CEO17643.1	mlaC	RMONA_06425	RMONA_02305	Muropeptide transporter.	Putative phospholipid-binding protein MlaC precursor.	0.418
cysA	mlaA	RMONA_01480	RMONA_02300	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid-binding lipoprotein MlaA precursor.	0.538
cysA	mlaC	RMONA_01480	RMONA_02305	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid-binding protein MlaC precursor.	0.921
cysA	mlaD	RMONA_01480	RMONA_03235	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid ABC transporter-binding protein MlaD.	0.998
cysA	mlaE	RMONA_01480	RMONA_01475	Sulfate/thiosulfate import ATP-binding protein CysA.	Putative phospholipid ABC transporter permease protein MlaE.	0.999
lptD	CEO16928.1	RMONA_08455	RMONA_02620	LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	Hypothetical protein.	0.674
lptD	mlaA	RMONA_08455	RMONA_02300	LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	Putative phospholipid-binding lipoprotein MlaA precursor.	0.437
lptD	mlaC	RMONA_08455	RMONA_02305	LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	Putative phospholipid-binding protein MlaC precursor.	0.450
mlaA	CEO16866.1	RMONA_02300	RMONA_02295	Putative phospholipid-binding lipoprotein MlaA precursor.	Tetratricopeptide repeat protein.	0.787
mlaA	CEO16928.1	RMONA_02300	RMONA_02620	Putative phospholipid-binding lipoprotein MlaA precursor.	Hypothetical protein.	0.825
mlaA	cysA	RMONA_02300	RMONA_01480	Putative phospholipid-binding lipoprotein MlaA precursor.	Sulfate/thiosulfate import ATP-binding protein CysA.	0.538
mlaA	lptD	RMONA_02300	RMONA_08455	Putative phospholipid-binding lipoprotein MlaA precursor.	LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.437
mlaA	mlaC	RMONA_02300	RMONA_02305	Putative phospholipid-binding lipoprotein MlaA precursor.	Putative phospholipid-binding protein MlaC precursor.	0.960