STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEO16956.1Undecaprenyl pyrophosphate phosphatase. (211 aa)    
Predicted Functional Partners:
aas
Bifunctional protein Aas.
   
 0.937
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.859
CEO17154.1
Hypothetical protein.
 
 
   0.762
CEO16723.1
Type IV secretion system protein VirB6.
  
     0.732
CEO16722.1
Type IV secretion system protein VirB6.
  
     0.731
CEO16607.1
Hypothetical protein; Split gene in original assembly 785 790.
  
     0.693
CEO16928.1
Hypothetical protein.
  
     0.683
CEO16724.1
Type IV secretion system protein VirB6.
  
     0.675
ompB
Outer membrane protein B precursor.
  
     0.674
surA
Chaperone SurA.
 
    0.663
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.