Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEO17049.1 | CEO17142.1 | RMONA_03255 | RMONA_03775 | Hypothetical protein. | Lipid A biosynthesis lauroyl acyltransferase. | 0.664 |
CEO17049.1 | kdsB | RMONA_03255 | RMONA_05930 | Hypothetical protein. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.405 |
CEO17049.1 | lpxA | RMONA_03255 | RMONA_02205 | Hypothetical protein. | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.696 |
CEO17049.1 | lpxB | RMONA_03255 | RMONA_04745 | Hypothetical protein. | Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.877 |
CEO17049.1 | lpxC | RMONA_03255 | RMONA_04080 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.580 |
CEO17049.1 | lpxD | RMONA_03255 | RMONA_02215 | Hypothetical protein. | UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.642 |
CEO17049.1 | lpxK | RMONA_03255 | RMONA_03770 | Hypothetical protein. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.778 |
CEO17049.1 | waaA | RMONA_03255 | RMONA_02280 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.737 |
CEO17139.1 | CEO17142.1 | RMONA_03760 | RMONA_03775 | Hypothetical protein. | Lipid A biosynthesis lauroyl acyltransferase. | 0.773 |
CEO17139.1 | lpxK | RMONA_03760 | RMONA_03770 | Hypothetical protein. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.773 |
CEO17139.1 | mepM_1 | RMONA_03760 | RMONA_03765 | Hypothetical protein. | Murein DD-endopeptidase MepM. | 0.773 |
CEO17142.1 | CEO17049.1 | RMONA_03775 | RMONA_03255 | Lipid A biosynthesis lauroyl acyltransferase. | Hypothetical protein. | 0.664 |
CEO17142.1 | CEO17139.1 | RMONA_03775 | RMONA_03760 | Lipid A biosynthesis lauroyl acyltransferase. | Hypothetical protein. | 0.773 |
CEO17142.1 | kdsB | RMONA_03775 | RMONA_05930 | Lipid A biosynthesis lauroyl acyltransferase. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.561 |
CEO17142.1 | lpxA | RMONA_03775 | RMONA_02205 | Lipid A biosynthesis lauroyl acyltransferase. | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.805 |
CEO17142.1 | lpxB | RMONA_03775 | RMONA_04745 | Lipid A biosynthesis lauroyl acyltransferase. | Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.860 |
CEO17142.1 | lpxC | RMONA_03775 | RMONA_04080 | Lipid A biosynthesis lauroyl acyltransferase. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.824 |
CEO17142.1 | lpxD | RMONA_03775 | RMONA_02215 | Lipid A biosynthesis lauroyl acyltransferase. | UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.806 |
CEO17142.1 | lpxK | RMONA_03775 | RMONA_03770 | Lipid A biosynthesis lauroyl acyltransferase. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.968 |
CEO17142.1 | mepM_1 | RMONA_03775 | RMONA_03765 | Lipid A biosynthesis lauroyl acyltransferase. | Murein DD-endopeptidase MepM. | 0.775 |
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