Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEO17144.1 | CEO17145.1 | RMONA_03785 | RMONA_03790 | Hypothetical protein. | Hypothetical protein. | 0.746 |
CEO17144.1 | bcp | RMONA_03785 | RMONA_03780 | Hypothetical protein. | Putative peroxiredoxin bcp. | 0.527 |
CEO17145.1 | CEO17144.1 | RMONA_03790 | RMONA_03785 | Hypothetical protein. | Hypothetical protein. | 0.746 |
CEO17145.1 | bcp | RMONA_03790 | RMONA_03780 | Hypothetical protein. | Putative peroxiredoxin bcp. | 0.510 |
bcp | CEO17144.1 | RMONA_03780 | RMONA_03785 | Putative peroxiredoxin bcp. | Hypothetical protein. | 0.527 |
bcp | CEO17145.1 | RMONA_03780 | RMONA_03790 | Putative peroxiredoxin bcp. | Hypothetical protein. | 0.510 |
bcp | grxC | RMONA_03780 | RMONA_00435 | Putative peroxiredoxin bcp. | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | 0.553 |
bcp | ilvE | RMONA_03780 | RMONA_05175 | Putative peroxiredoxin bcp. | Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.464 |
bcp | polA | RMONA_03780 | RMONA_00495 | Putative peroxiredoxin bcp. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.525 |
bcp | recA | RMONA_03780 | RMONA_00605 | Putative peroxiredoxin bcp. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.407 |
bcp | sodB | RMONA_03780 | RMONA_06640 | Putative peroxiredoxin bcp. | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.442 |
bcp | tlpA | RMONA_03780 | RMONA_06300 | Putative peroxiredoxin bcp. | Thiol:disulfide interchange protein TlpA. | 0.501 |
bcp | trxA | RMONA_03780 | RMONA_02185 | Putative peroxiredoxin bcp. | Thioredoxin-1; Belongs to the thioredoxin family. | 0.712 |
bcp | tsaA | RMONA_03780 | RMONA_07595 | Putative peroxiredoxin bcp. | Putative peroxiredoxin. | 0.575 |
grxC | bcp | RMONA_00435 | RMONA_03780 | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Putative peroxiredoxin bcp. | 0.553 |
grxC | sodB | RMONA_00435 | RMONA_06640 | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.488 |
grxC | tlpA | RMONA_00435 | RMONA_06300 | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Thiol:disulfide interchange protein TlpA. | 0.524 |
grxC | trxA | RMONA_00435 | RMONA_02185 | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Thioredoxin-1; Belongs to the thioredoxin family. | 0.575 |
grxC | tsaA | RMONA_00435 | RMONA_07595 | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. | Putative peroxiredoxin. | 0.627 |
ilvE | bcp | RMONA_05175 | RMONA_03780 | Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | Putative peroxiredoxin bcp. | 0.464 |
page 1 of 3