Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEO17323.1Hypothetical protein. (325 aa)    
Predicted Functional Partners:
CEO16722.1
Type IV secretion system protein VirB6.
  
     0.691
CEO16723.1
Type IV secretion system protein VirB6.
  
     0.678
ompB
Outer membrane protein B precursor.
  
     0.676
surA
Chaperone SurA.
  
     0.642
CEO16607.1
Hypothetical protein; Split gene in original assembly 785 790.
  
     0.638
CEO17154.1
Hypothetical protein.
  
     0.634
CEO16724.1
Type IV secretion system protein VirB6.
  
     0.601
CEO16928.1
Hypothetical protein.
  
     0.556
CEO18037.1
Bacterial extracellular solute-binding proteins, family 3.
  
     0.551
CEO16668.1
Hypothetical protein.
  
     0.549
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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