Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEO17359.1Transglycosylase SLT domain protein. (258 aa)    
Predicted Functional Partners:
CEO17360.1
Hypothetical protein.
       0.780
CEO17361.1
Hypothetical protein.
       0.605
rlpA
RlpA-like protein precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.591
CEO17447.1
Helix-turn-helix domain protein.
 
     0.541
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.506
CEO17358.1
Hypothetical protein.
       0.501
CEO16953.1
Putative permease YjgP/YjgQ family protein.
  
     0.488
CEO17456.1
O-Antigen ligase.
  
   
 0.467
bioC
Malonyl-[acyl-carrier protein] O-methyltransferase.
       0.462
CEO16528.1
Putative permease YjgP/YjgQ family protein.
  
     0.461
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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