CEO17395.1 protein (Rickettsia monacensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEO17395.1

PD-(D/E)XK nuclease family transposase. (181 aa)

Predicted Functional Partners:

kanE

0.802

glnG

0.686

CEO17337.1

0.685

CEO17776.1

0.561

CEO17531.1

0.547

CEO17518.1

0.526

groEL

0.485

rplN

0.485

CEO17302.1

0.471

CEO16746.1

0.458

Your Current Organism:

Rickettsia monacensis

NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEO16746.1	CEO17395.1	RMONA_01685	RMONA_05085	PqqC-like protein.	PD-(D/E)XK nuclease family transposase.	0.458
CEO16746.1	CEO17518.1	RMONA_01685	RMONA_05735	PqqC-like protein.	Putative transposase.	0.437
CEO17302.1	CEO17395.1	RMONA_04585	RMONA_05085	Putative transposase.	PD-(D/E)XK nuclease family transposase.	0.471
CEO17302.1	CEO17518.1	RMONA_04585	RMONA_05735	Putative transposase.	Putative transposase.	0.773
CEO17302.1	CEO17531.1	RMONA_04585	RMONA_05830	Putative transposase.	Putative transposase.	0.773
CEO17337.1	CEO17395.1	RMONA_04760	RMONA_05085	PD-(D/E)XK nuclease family transposase.	PD-(D/E)XK nuclease family transposase.	0.685
CEO17337.1	glnG	RMONA_04760	RMONA_06125	PD-(D/E)XK nuclease family transposase.	Nitrogen regulation protein NR(I).	0.686
CEO17337.1	groEL	RMONA_04760	RMONA_04380	PD-(D/E)XK nuclease family transposase.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.485
CEO17337.1	rplN	RMONA_04760	RMONA_08170	PD-(D/E)XK nuclease family transposase.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.485
CEO17395.1	CEO16746.1	RMONA_05085	RMONA_01685	PD-(D/E)XK nuclease family transposase.	PqqC-like protein.	0.458
CEO17395.1	CEO17302.1	RMONA_05085	RMONA_04585	PD-(D/E)XK nuclease family transposase.	Putative transposase.	0.471
CEO17395.1	CEO17337.1	RMONA_05085	RMONA_04760	PD-(D/E)XK nuclease family transposase.	PD-(D/E)XK nuclease family transposase.	0.685
CEO17395.1	CEO17518.1	RMONA_05085	RMONA_05735	PD-(D/E)XK nuclease family transposase.	Putative transposase.	0.526
CEO17395.1	CEO17531.1	RMONA_05085	RMONA_05830	PD-(D/E)XK nuclease family transposase.	Putative transposase.	0.547
CEO17395.1	CEO17776.1	RMONA_05085	RMONA_07120	PD-(D/E)XK nuclease family transposase.	Hypothetical protein.	0.561
CEO17395.1	glnG	RMONA_05085	RMONA_06125	PD-(D/E)XK nuclease family transposase.	Nitrogen regulation protein NR(I).	0.686
CEO17395.1	groEL	RMONA_05085	RMONA_04380	PD-(D/E)XK nuclease family transposase.	60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.485
CEO17395.1	kanE	RMONA_05085	RMONA_05080	PD-(D/E)XK nuclease family transposase.	Alpha-D-kanosaminyltransferase.	0.802
CEO17395.1	rplN	RMONA_05085	RMONA_08170	PD-(D/E)XK nuclease family transposase.	50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.485
CEO17518.1	CEO16746.1	RMONA_05735	RMONA_01685	Putative transposase.	PqqC-like protein.	0.437