STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocatechuate 3,4-dioxygenase beta chain. (208 aa)    
Predicted Functional Partners:
ubiF
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
 
   
 0.595
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
  
 0.534
fadB
Fatty acid oxidation complex subunit alpha.
      
 0.523
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
  
 0.521
dhmA
Haloalkane dehalogenase.
     
 0.495
CEO17616.1
FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.440
CEO16722.1
Type IV secretion system protein VirB6.
  
     0.439
CEO17615.1
Hypothetical protein.
       0.439
CEO16723.1
Type IV secretion system protein VirB6.
  
     0.417
CEO16832.1
Fatty acid desaturase.
  
     0.405
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.