STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiECarnitine operon protein CaiE. (173 aa)    
Predicted Functional Partners:
CEO16901.1
Hypothetical protein.
   
 
 0.866
CEO17739.1
Ribosome-associated factor Y.
     
 0.804
fadB
Fatty acid oxidation complex subunit alpha.
  
  
 0.654
CEO17737.1
Hypothetical protein.
       0.550
trxA
Thioredoxin-1; Belongs to the thioredoxin family.
   
   0.488
CEO17736.1
Transposase DDE domain protein.
       0.477
CEO17740.1
Hypothetical protein.
       0.439
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
      0.429
CEO17735.1
Hypothetical protein.
       0.406
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.