Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virD4Type IV secretion system protein virD4. (593 aa)    
Predicted Functional Partners:
CEO17946.1
Type IV secretion system protein virB10.
 
 
 
 0.966
virB8_1
Type IV secretion system protein VirB8.
 
   
 0.930
virB4_2
Type IV secretion system protein virB4.
 
  
 0.921
CEO17945.1
Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.919
virB9_2
Type IV secretion system protein virB9 precursor.
 
   
 0.910
CEO16718.1
Type IV secretory pathway, VirB3-like protein.
 
   
 0.892
virB9_1
Type IV secretion system protein virB9 precursor.
 
   
 0.867
virB4_1
Type IV secretion system protein virB4.
 
  
 0.819
CEO17943.1
Guanosine pentaphosphate phosphohydrolase.
       0.779
CEO17683.1
Patatin-like phospholipase.
    
   0.640
Your Current Organism:
Rickettsia monacensis
NCBI taxonomy Id: 109232
Other names: R. monacensis, Rickettsia sp. IrR/Munich, strain IrR/Munich
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.